SiTx
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Dataset
Spatial DimPlot
Median values per spot per region
Nanopore vs Illumina gene-level nUMIs per spatial spot
Nanopore vs Illumina gene-level nFeatures per spatial spot
Inputs
Illumina gene-level
Nanopore gene-level
Inputs
Gene selection
Minimum total UMI to plot isoform
submit
Ensembl isoforms
Nanopore isoform-level
Inputs
Gene selection
Minimum total UMI to plot junction
submit
Ensembl isoforms
Nanopore junction-level heatmap
Nanopore junction-level violin plot
Inputs
Gene selection
Minimum total UMI to plot editing site
submit
Editing ratio per region
Nanopore editing-level (Non-edited molecules)
Nanopore editing-level (Edited molecules)
Deconvolution using single cell external dataset
Cell types
Deconvolution score spatial DimPlot
Deconvolution score DotPlot per region
Differential analysis between regions
Region 1
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Region 2
Assay
Top features
Differential expression analysis
Focus on features
Feature focus